- Rice Coexpression Database
Co-expression analysis of Rice(Not yet)
Epistasis analysis for Recombinant inbred lines(RILs).
Sakai T, Abe A, Shimizu M, Terauchi R
RIL-StEp: epistasis analysis of rice recombinant inbred lines (RILs) reveals candidate interacting genes that control seed hull color and leaf chlorophyll content. G3 2021 doi: 10.1093/g3journal/jkab130
Kourelis, J, Sakai, T, Adachi, H, and Kamoun, S
RefPlantNLR: a comprehensive collection of experimentally validated plant NLRs. bioRxiv 2021, doi: 10.1101/2020.07.08.193961.
Adachi, H, Sakai, T, Kourelis, J, Maqbool, A, and Kamoun, S
Jurassic NLR: conserved and dynamic evolutionary features of the atypically ancient immune receptor ZAR1. bioRxiv 2020, doi: 10.1101/2020.10.12.333484.
Ding P, Sakai T, Shrestha RK, Perez NM, Guo W, Ngou BPM, He S, Liu C, Feng X, Zhang R, Vandepoele K, MacLean D, Jones JDG
Chromatin accessibility landscapes activated by cell surface and intracellular immune receptors. bioRxiv 2020 doi: 10.1101/2020.06.17.157040
Harant A, Sakai T, Kamoun S, Adachi H
A vector system for fast-forward in vivo studies of the ZAR1 resistosome in the model plant Nicotiana benthamiana. bioRxiv 2020 doi: 10.1101/2020.05.15.097584
Ding P, Ngou BPM, Oliver J. Furzer OJ, Sakai T, Shrestha RK, MacLean D, Jones JDG
High-resolution Expression Profiling of Selected Gene Sets during Plant Immune Activation. Plant Biotechnol J. 2020 Jan 8. doi: 10.1111/pbi.13327
Adachi H, Contreras M, Harant A, Wu CH, Derevnina L, Sakai T, Duggan C, Moratto E, Bozkurt TO, Maqbool A, Win J, Kamoun S
An N-terminal motif in NLR immune receptors is functionally conserved across distantly related plant species. eLife 2019;8:e49956 doi: 10.7554/eLife.49956
MSc, Kyoto University, Crop evolution lab, Japan
(2019~) Visiting student, The Sainsbury Laboratory, Sophien Kamoun group, UK
Python, Bioinformatics, Statistics, Machine Learning, Genomics, Boxing